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1

Downstream processing of monoclonal antibodies—Application of platform approaches

Abhinav A. Shukla, Brian Hubbard, Tim Tressel, Sam Guhan, Duncan Low

Journal:

Journal of Chromatography B

Year:

2007

Language:

english

File:

PDF, 879 KB

english, 2007

2

Geography and the Entrepreneurial City: Futures, Strategies, Perspectives

Tim Hall and Phil Hubbard

Journal:

Year:

1996

Language:

english

File:

PDF, 423 KB

english, 1996

3

To GEE or Not to GEE

Hubbard, Alan E., Ahern, Jennifer, Fleischer, Nancy L., Laan, Mark Van der, Lippman, Sheri A., Jewell, Nicholas, Bruckner, Tim, Satariano, William A.

Journal:

Year:

2010

Language:

english

File:

PDF, 410 KB

english, 2010

4

Characterisation of mental health conditions in social media using Informed Deep Learning

Gkotsis, George, Oellrich, Anika, Velupillai, Sumithra, Liakata, Maria, Hubbard, Tim J. P., Dobson, Richard J. B., Dutta, Rina

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 556 KB

english, 2017

5

A multifunctional silicon-based microscale surgical system

Il-Seok Son, Amit Lal, Bill Hubbard, Tim Olsen

Journal:

Sensors and Actuators A: Physical

Year:

2001

Language:

english

File:

PDF, 466 KB

english, 2001

6

Critical assessment of methods of protein structure prediction (CASP)-round V

John Moult, Krzysztof Fidelis, Adam Zemla, Tim Hubbard

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 69 KB

english, 2003

7

Critical assessment of methods of protein structure prediction (CASP)—Round 6

John Moult, Krzysztof Fidelis, Burkhard Rost, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 66 KB

english, 2005

8

AnnoTrack - a tracking system for genome annotation

Felix Kokocinski, Jennifer Harrow, Tim Hubbard

Journal:

Year:

2010

Language:

english

File:

PDF, 681 KB

english, 2010

9

SCOP: A structural classification of proteins database for the investigation of sequences and structures

Alexey G. Murzin, Steven E. Brenner, Tim Hubbard, Cyrus Chothia

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 5.41 MB

english, 1995

10

PROTEIN FOLDS IN THE ALL-β AND ALL-α CLASSES

Chothia, Cyrus, Hubbard, Tim, Brenner, Steven, Barns, Hugh, Murzin, Alexey

Journal:

Annual Review of Biophysics and Biomolecular Structure

Year:

1997

Language:

english

File:

PDF, 1.32 MB

english, 1997

11

Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning

Gkotsis, George, Oellrich, Anika, Velupillai, Sumithra, Liakata, Maria, Hubbard, Tim J. P., Dobson, Richard J. B., Dutta, Rina

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 107 KB

english, 2017

12

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Gweon, H. Soon, Shaw, Liam P., Swann, Jeremy, De Maio, Nicola, AbuOun, Manal, Niehus, Rene, Hubbard, Alasdair T. M., Bowes, Mike J., Bailey, Mark J., Peto, Tim E. A., Hoosdally, Sarah J., Walker, A. S

Journal:

Environmental Microbiome

Year:

2019

Language:

english

File:

PDF, 2.32 MB

english, 2019

13

Numerical criteria for the evaluation of ab initio predictions of protein structure

Zemla, Adam, Venclovas, Česlovas, Reinhardt, Astrid, Fidelis, Krzysztof, Hubbard, Tim J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 731 KB

english, 1997

14

Critical assessment of methods of protein structure prediction (CASP): Round II

Moult, John, Hubbard, Tim, Bryant, Stephen H., Fidelis, Krzysztof, Pedersen, Jan T.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 35 KB

english, 1997

15

GLASS: A tool to visualize protein structure prediction data in three dimensions and evaluate their consistency

Raphael Leplae, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 1.07 MB

english, 1998

16

RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions

Tim J.P. Hubbard

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 736 KB

english, 1999

17

Critical assessment of methods of protein structure prediction (CASP): Round III

John Moult, Tim Hubbard, Krzysztof Fidelis, Jan T. Pedersen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 61 KB

english, 1999

18

Critical assessment of methods of protein structure prediction (CASP): Round IV

John Moult, Krzysztof Fidelis, Adam Zemla, Tim Hubbard

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 66 KB

english, 2001

19

Assessment of novel fold targets in CASP4: Predictions of three-dimensional structures, secondary structures, and interresidue contacts

Arthur M. Lesk, Loredana Lo Conte, Tim J.P. Hubbard

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 667 KB

english, 2001

20

Prediction targets of CASP4

Alexey Murzin, Tim J.P. Hubbard

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 469 KB

english, 2001

21

CASP5 target classification

Lisa N. Kinch, Yuan Qi, Tim J. P. Hubbard, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 1.35 MB

english, 2003

22

New tools and expanded data analysis capabilities at the protein structure prediction center

Andriy Kryshtafovych, Andreas Prlic, Zinoviy Dmytriv, Pawel Daniluk, Maciej Milostan, Volker Eyrich, Tim Hubbard, Krzysztof Fidelis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 804 KB

english, 2007

23

Critical assessment of methods of protein structure prediction—Round VII

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Burkhard Rost, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 114 KB

english, 2007

24

Prediction of the structure of GroES and its interaction with GroEL

Alfonso Valencia, Tim J. Hubbard, Arturo Muga, Sonia Bañuelos, Oscar Llorca, José L. Carrascosa, José Marí Valpuesta

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1995

Language:

english

File:

PDF, 1.16 MB

english, 1995

25

Fold recognition and ab initio structure predictions using hidden markov models and β-strand pair potentials

Tim J. Hubbard, J. Park

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1995

Language:

english

File:

PDF, 567 KB

english, 1995

26

Impact of contractual financial incentives on the ascertainment and management of smoking in primary care

Tim Coleman, Sarah Lewis, Richard Hubbard, Christopher Smith

Journal:

Year:

2007

Language:

english

File:

PDF, 263 KB

english, 2007

27

10.1038/35002770

Hubbard, Tim, Birney, Ewan

Journal:

Year:

2000

Language:

english

File:

PDF, 65 KB

english, 2000

28

Mining the draft human genome

Birney, Ewan, Bateman, Alex, Clamp, Michele E., Hubbard, Tim J.

Journal:

Year:

2001

Language:

english

File:

PDF, 86 KB

english, 2001

29

Gene duplications in H. influenzae

Brenner, Steven E., Hubbard, Tim, Murzin, Alexey, Chothia, Cyrus

Journal:

Year:

1995

File:

PDF, 300 KB

1995

30

Cancer gene discovery in mouse and man

Jenny Mattison, Louise van der Weyden, Tim Hubbard, David J. Adams

Journal:

Biochimica et Biophysica Acta (BBA) - Reviews on Cancer

Year:

2009

Language:

english

File:

PDF, 805 KB

english, 2009

31

Using molecular phylogeny to investigate the bacteria associated with the cabbage aphid (Brevicoryne brassicae)

Emily L. Clark, Alison J. Karley, Jane Wishart, Tim J. Daniell, Stephen F. Hubbard

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Year:

2009

Language:

english

File:

PDF, 57 KB

english, 2009

32

ITFoM – The IT Future of Medicine

Hans Lehrach, Ralf Subrak, Peter Boyle, Markus Pasterk, Kurt Zatloukal, Heimo Müller, Tim Hubbard, Angela Brand, Mark Girolami, Daniel Jameson, Frank J. Bruggeman, Hans V. Westerhoff

Journal:

Procedia Computer Science

Year:

2011

Language:

english

File:

PDF, 131 KB

english, 2011

33

The Significance of Performance Ranking in CASP—Response to Marti-Renom et al.

John Moult, Krzysztof Fidelis, Adam Zemla, Tim Hubbard, Anna Tramontano

Journal:

Year:

2002

Language:

english

File:

PDF, 31 KB

english, 2002

34

Update on protein structure prediction: results of the 1995 IRBM workshop

Tim Hubbard, Anna Tramontano

Journal:

Folding and Design

Year:

1996

Language:

english

File:

PDF, 75 KB

english, 1996

35

Metamotifs - a generative model for building families of nucleotide position weight matrices

Matias Piipari, Thomas A Down, Tim JP Hubbard

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.25 MB

english, 2010

36

What can we learn from noncoding regions of similarity between genomes?

Thomas A Down, Tim JP Hubbard

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 390 KB

english, 2004

37

A machine learning strategy to identify candidate binding sites in human protein-coding sequence

Thomas Down, Bernard Leong, Tim JP Hubbard

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 616 KB

english, 2006

38

Integrating sequence and structural biology with DAS

Andreas Prlić, Thomas A Down, Eugene Kulesha, Robert D Finn, Andreas Kähäri, Tim JP Hubbard

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 630 KB

english, 2007

39

NestedMICA as an ab initio protein motif discovery tool

Mutlu Doğruel, Thomas A Down, Tim JP Hubbard

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.89 MB

english, 2008

40

Integrating biological data – the Distributed Annotation System

Andrew M Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert D Finn, Henning Hermjakob, Tim JP Hubbard, Rafael C Jimenez, Philip Jones, Andreas Kähäri, Eugene Kulesha, José

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 257 KB

english, 2008

41

Knowledge-based protein modelling and design

Tom BLUNDELL, Devon CARNEY, Stephen GARDNER, Fiona HAYES, Brendan HOWLIN, Tim HUBBARD, John OVERINGTON, Diljeet Athwal SINGH, Bancinyane Lynn SIBANDA, Michael SUTCLIFFE

Journal:

Year:

1988

Language:

english

File:

PDF, 781 KB

english, 1988

42

Intermediate sequences increase the detection of homology between sequences

Jong Park, Sarah A. Teichmann, Tim Hubbard, Cyrus Chothia

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 180 KB

english, 1997

43

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

Jong Park, Kevin Karplus, Christian Barrett, Richard Hughey, David Haussler, Tim Hubbard, Cyrus Chothia

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 249 KB

english, 1998

44

Large-Scale Mutagenesis in p19ARF- and p53-Deficient Mice Identifies Cancer Genes and Their Collaborative Networks

Anthony G. Uren, Jaap Kool, Konstantin Matentzoglu, Jeroen de Ridder, Jenny Mattison, Miranda van Uitert, Wendy Lagcher, Daoud Sie, Ellen Tanger, Tony Cox, Marcel Reinders, Tim J. Hubbard, Jane Rogers

Journal:

Year:

2008

Language:

english

File:

PDF, 1.81 MB

english, 2008

45

Domain Insertions in Protein Structures

R. Aroul-Selvam, Tim Hubbard, Rajkumar Sasidharan

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 799 KB

english, 2004

46

Multi-pathway control of the proliferation versus meiotic development decision in the Caenorhabditis elegans germline

Dave Hansen, E.Jane Albert Hubbard, Tim Schedl

Journal:

Developmental Biology

Year:

2004

Language:

english

File:

PDF, 905 KB

english, 2004

47

The Solution Structure of the S1 RNA Binding Domain: A Member of an Ancient Nucleic Acid–Binding Fold

Mark Bycroft, Tim J.P Hubbard, Mark Proctor, Stefan M.V Freund, Alexey G Murzin

Journal:

Year:

1997

Language:

english

File:

PDF, 922 KB

english, 1997

48

New horizons in sequence analysis

Journal:

Current Opinion in Structural Biology

Year:

1997

Language:

english

File:

PDF, 372 KB

english, 1997

49

Population statistics of protein structures: lessons from structural classifications

Steven E Brenner, Cyrus Chothia, Tim JP Hubbard

Journal:

Current Opinion in Structural Biology

Year:

1997

Language:

english

File:

PDF, 688 KB

english, 1997

50

The GENCODE pseudogene resource

Baikang Pei, Cristina Sisu, Adam Frankish, Cédric Howald, Lukas Habegger, Xinmeng Jasmine Mu, Rachel Harte, Suganthi Balasubramanian, Andrea Tanzer, Mark Diekhans, Alexandre Reymond, Tim J Hubbard, Je

Journal:

Year:

2012

Language:

english

File:

PDF, 3.06 MB

english, 2012